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You do need to restore the bloatware yourself (somehow) before you unroot - it will not return on its own. Pete's one-click root package, which can unroot as well, has a way to download a zip file with the system apps in it to restore, but the one time that I tried that it would not work. The other complication is that the new 906 system is supposed to be rolling out soon, and once your stock system is updated to that, Pete's original system files will be old and I'm not sure what would happen if the phone was unrooted.
Originally Posted by firemanb72
You are on the right track with using Titanium to freeze the apps, if the pre-installed apps really are that bothersome to you.