OK... I returned to stock from using AOKP. That being said, everything works as desired except for one thing. After disabling apps from running there are now a lot of gaps where all my app icons are located. Even weirder thing... new apps I install go at the end of my apps, regardless of the starting letter (usually new apps are alphabetized).
Here is a screen shot of the first apps page:
Here is a screen shot of the last page of stock apps and then all the app's I've installed.:
Here is a screen shot of the first apps page:
Here is a screen shot of the last page of stock apps and then all the app's I've installed.: