Same thing with me on Samsung GT-I9300 with Android 4.1.1
I came across this problem 2 times.
The first time it happened when I installed a game "Waking Mars". The game was working fine, I played for around 20 minutes and then wanted to check free storage left after installing. But when I opened Application manager swiping was very laggy and after a few (5-10) secs it crashed with "Unfortunately, Settings has stopped" error or just closed. At that time I didn't know that it was because of "Waking Mars" and started to delete unnecessery applications I installed that day and yesterday, but problem vanished only after uninstalling "Waking Mars". Also, while this app was installed, phone's screen was glitchy and became bleached (the glitch disappeared after rebooting), like when "Natural" screen mode is activated, but it wasn't. When I had tried to install the game again, the problem came back.
The second time it was because of "Galaxy On Fire 2" installed. Same problems appeared: crashing Application manager and glitchy screen.
Both games contained their data in ".apk" file, but another Waking Mars version with separate data (cache) caused the same problem too.
For those of you who wanna check if the game works fine on your device, check these .apk's:
Waking Mars
Galaxy on Fire 2 for Mali-400 MP devices (Galaxy S3\S2\Note)
By the way, funny thing is that both games are about space

P.S.: Sorry for my English, it isn't my native language.