I got to thinking about this after a post reporting "drips" of bright spots when the screen is black. This is part of a normal AMOLED screen (variations due to an imperfect doping process) but some have it worse than others.
I did a "Black test" (hint, you don't need a special app just take a picture in the dark and then open the picture and wait for the softkeys to turn off) in a completely dark room and noticed the same exact thing as the OP, there are three very small patches that show up totally dark, and the rest of the screen has a slight glow to it. Since this requires a totally black screen and a totally black room, there isn't much chance I will ever be bothered by it. I would say this is probably the threshold for "normal", if you can see the defects in normal menu or app operation in a dim room then you might want to consider filing for a replacement and rolling the dice again.