Every so often I lose a few of my shortcut icons (they change to the android and say a link not the app name) and they are nowhere to be found on my phone. anyone else have any issues like this?
I've had the same issue on ThundeROM intermittently and my wife on stock just today. Always overnight. I've restored using Titanium backup as they show as uninstalled. Haven't tried an unmount/re-mount. It's never all the apps on the SD, just one or a few. I'll check that out next time.
I've had the same problem with mine. The apps seem like they've been uninstalled, but it was because my SD card was unmounted or rather, the SD card reader wasn't working. To fix it, I unmount the card, wait a few seconds, then remount. Give it a few seconds and the apps should be "re-installed" on your phone.
Just happened to me last night. I powered off and then powered on and then different apps were now with broken links and displayed ANDROID icon instead of App icon. I did a battery pull and voila! Fixed.... I hope that doesn't happen to often