juice defender would ask for that aosp thing before it rooted too. i think, but idk.
i get what your asking murso, its just at first you said " i'm wondering if there are any other programs i should be reinstalling now..."
the answer is no. just do whatever you do. as you put in new roms and restore your apps, itll ask for root permission (ONCE YOU OPEN THEM)
otherwise it really does not matter.
if you want to make sure all your apps have super user permission then by all means go ahead. idk what ones get it though but to list a few:
titanium backup - wireless tether - rom manager