I got all of mine back, plus I can search others that weren't there before. I followed the directions in XDA
1. Get DamagedControl 2.0.5 working just the way you want, minus paid/protected apps
2. Nandroid backup (+ EXT if you are using Apps2SD)
3. Wipe Data/Factory Reset
4. Flash Fresh 1.1 (a 1.5 based ROM)
5. Install the apps you wanted or owned.
6. Reboot into recovery and Wipe data/ factory restore
7. NandRestore previous setup
8. Sit back and enjoy as your apps will magically be downloaded automatically (download may fail, just redo it.)
9. Confirm by checking to see if another app is in the market that wasn't there before, I searched for MLB At Bat 2010 and it was there when it previously wasn't.
Hope this helps someone, the new ROM is fantastic and easy on the battery, plus ROOT access, can't beat it.