my phone is Galaxy s4. and i checked the cache partition and the problem is still. Also i have another problem that when i have missed call is not appear the notification (No. of missed call) in the phone icon.
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Welcome to Android Central! This sounds like a ROM bug or error during installation. Since you flashed it manually I would follow B Diddy's advice and reinstall the firmware using the same tools.
And you're certain that you have the firmware for that exact model of phone, right? If you install the wrong firmware, it might not work completely correctly.