On xda one of the devs looked into the issue because he thought it was a Rom issue but when he looked at his logcat he says that its a java error on certain websites that you would visit.
Ive had this problem for a while as well, and switched to dolphin to avoid it.
Based on the above info I disabled javascript in settings/advanced for the stock browser and it seems to have taken care of the problem. I have visited a few sites from bookmarks and so far so good. I havnt tested this very long so too early to really tell, FWIW if turning off javascript doesnt work, there is also option to turn of flash as well.
			
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