Just curious- Where did you pick up the above settings recommendations? Xda?
As for rooting- like many people, I am not afraid of rooting, that is easy. I am concerned about what happens AFTER that. When I rooted my Evo OG, no more updates, and it was not possible to unroot it without wiping the phone completely. Never bothered on the Evo 3D. Does that "unroot" app you mention (and in the article) just perform a temporary unroot, or permanent? Does it require wiping the phone??
They are showing the RUU, which is a complete wipe, and apparently the only way to remove the "TAMPER" flag.
I figured I would wait until after the first update, to give HTC a chance to fix things. We shall see how patient I am (or am not).
As to the subject of unrooting, wipes, and updates...
Your biggest reservation about rooting seems to be a distaste for having to wipe either to root or unroot... But that's exactly why in the long run the second method is so much more flexible. Once you're unlocked you can perform backups of the entire phone (NAND backups done in recovery, they 're like system images on a PC created with Ghost or Arconis), and then try an entirely different ROM, if you don't like it you can restore the backup and everything is exactly as you left it. Same deal when updates roll out and you wanna install an updated ROM.
You can also backup individual apps instead (or all of them) using something like Titanium, you can backup app data too (tho you have to be selective, it's ok to restore texts or game data but restoring data for system apps can be dicey).
If you've already invested some time in customizing your phone you can even take advantage of both root methods... Use the first one until an official update comes around to see what it's all about OR use it to root sans wipe so you can backup everything and then root for real with the second.
There's one other form unroot which involves giving up the actual root privileges in order to run the rare app that balks at a rooted device (such as Play Store video rentals), usually that's done using something like Voodoo Root Keeper, which at times can even restore root after an update... Don't think that's available yet for the EVO tho.
Your other big reservation regarding root centers around updates I think... Again with the first method you can sorta paint yourself into a corner. You can accept an update but it may undo root (however the official HTC unlock method will always be an option), in some rare cases you may even have to RUU in order to accept an update. With the second method you sorta have to take a more hands on approach but updates become very trivial.
Custom ROM devs (good ones anyway) will have an update to their ROM with all the manufacturer's changes within a day of the official update rollouts, sometimes even before then since updates have a tendency to leak early lie a sieve... And with all the backup options at your disposal (I only touched on a couple) you can flash a new/updated ROM and have everything working and configured how you like in less than 15 min.
Having all those backup options actually gives me a great deal of peace of mind that I can experiment with my phone and whatnot but I can always quickly get back to a known working state. It's probably the second or third best thing about full root or an unlocked bootloader.
Frankly manufacturer updates, when performed in place, often end up in a very buggy state anyway (particularly when it's to a new Android version, just like upgrading a desktop OS without a drive format), and the solution ends up being a full wipe/restore... Difference being you then have no recourse for backing up diddly.
I'm not advocating everyone should root or that it's some sort of panacea to every issue... But if you're knowledgeable enough to be bothered by some of the shortcomings of a stock device (like the EVO's memory handling) and you even understand why those things are like they are, then you'd be silly not to take advantage of the available options to address said issues or improve your device.
Granted not every tech oriented user will always have the time or disposition to research this kind of thing properly in order to tinker with the device in an informed manner (sort of like building your own desktop PC)... But message boards like these and XDA can quickly bridge the gap.