Usually when i want to remove a system app, I either use Lucky Patcher(although the app hasn't been playing well lately) or I simply delete the apk from /system/app or /system/app-priv through TWRP's file browser, or a file browser app on the phone. TB could very well be misreading the system app location as Squid said earlier.
I usually use the outdated Better Keyboard 8 for GB(paid version) as my keyboard cause its highly customizable, and I've yet to find a newer keyboard that has similar functions as it does that I enjoy. For my launcher, I use Nova Prime. The prepackaged launcher irritates me with its menu function lacking an option to launch system settings as all other launchers normally do(by bringing up an actual menu).
As far as I know, Apollo has always had a repeat function since my use of it. Then again, when it was first introduced into CM9 I think I replaced it with an updated version than what was provided.
I can't wait to see if CM12 boots on this OV!! The ZTE Awe community on AF already has it booting already!!
Sadly I'll be picking up a Kyrocera Hydro vibe this black friday from Target for $30. It has a locked bootloader so I wont be able to do much on it but root it. I may be getting the HTC Desire 510 from best buy for $30 on black friday as well, but it being x64 architecture, there's no known way to root it yet. One of my friends might toss me their Samsung Galaxy Ring to toy around with as well, but there's not much of a modding community for it either. Of course I'll still be keeping up with the OV as long as there are still developers for it till it's absolute death of development.
Sent from my LG-VM670