I think the car dock was badly designed. I was trying to get my phone to charge while in the dock today. Even with out any apps running I couldn't get the phone to charge while in the dock. I tried both the version car chager and the ac adapter for the usb cored. Neither one would work, but both would work fine if I plugged them straight into the phone. After playing around with it for a little bit I noticed that phone wouldn't seat all the into the dock when it was in the case(verizon case holster). I took it out of case and then the phone would seat enough, so that it would charge with either charger. I even tried modifying the dock like others have suggested on here, but I can't get it to seat well enough to charge in the dock while in a case, but it works fine out of the case.
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I don't think the dock was badly designed, just not designed to accommodate a case. I wouldn't mind having one that is designed for a case, but this one wasn't.