The only way to get this to work is to flash back your initial nanadroid backup.
I had the same problem finally told the CSR to just reset my plan from there end and about five minutes later everything was back to normal. It appears you have to instruct the CSR to manually reset it on their end or they will try to pawn it off on reset/reprogramming your phone.
RE
roblems flashing the recovery and new roms.
This is a awesome tool that I appreciate, but really if your having problems I suggest taking the time to read up on how to manually do this. If you cant find the instructions in our section try the S section.
These one-click/just press this button then this button programs are whats causing people to brick their phones. Not that they are a bad malicious program. Just too many people that dont know what they are doing using them. If you dont feel comfortable inputing the adb commands you should not be trying to root your phone. Personally I use romtools when I can but its mostly a convenience reason. I would rather type the commands myself so I can see if for some reason there is a mistype error causing problems.
I give mmmark111 huge kudos for creating this. I appreciate it and think its awesome. But in the end it allows more uninformed people to do something they otherwise shouldnt be doing.